{ "_id": "6a18170dacfb0bcc41dafa8b", "Package": "metaconfoundr", "Title": "Visualize 'Confounder' Control in Meta-Analyses", "Version": "0.1.2.9000", "Authors@R": "c(\nperson(\"Malcolm\", \"Barrett\", , \"malcolmbarrett@gmail.com\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-0299-5825\")),\nperson(\"Julie M.\", \"Petersen\", , \"juliemo@bu.edu\", role = \"aut\",\ncomment = c(ORCID = \"0000-0001-7845-4545\")),\nperson(\"Ludovic\", \"Trinquart\", , \"ludovic@bu.edu\", role = \"aut\",\ncomment = c(ORCID = \"0000-0002-3028-4900\"))\n)", "Description": "Visualize 'confounder' control in meta-analysis.\n'metaconfoundr' is an approach to evaluating bias in studies\nused in meta-analyses based on the causal inference framework.\nStudy groups create a causal diagram displaying their\nassumptions about the scientific question. From this, they\ndevelop a list of important 'confounders'. Then, they evaluate\nwhether studies controlled for these variables well.\n'metaconfoundr' is a toolkit to facilitate this process and\nvisualize the results as heat maps, traffic light plots, and\nmore.", "License": "MIT + file LICENSE", "URL": "https://github.com/malcolmbarrett/metaconfoundr", "BugReports": "https://github.com/malcolmbarrett/metaconfoundr/issues", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "Encoding": "UTF-8", "Language": "en-US", "LazyData": "true", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.1.2", "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev zlib1g-dev", "Repository": "https://malcolmbarrett.r-universe.dev", "Date/Publication": "2023-01-17 18:54:56 UTC", "RemoteUrl": "https://github.com/malcolmbarrett/metaconfoundr", "RemoteRef": "HEAD", "RemoteSha": "3af7bc98a79d090d68c79551bcc86cf5b61d2489", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-28 10:12:57 UTC", "User": "root" }, "Author": "Malcolm Barrett [aut, cre] (ORCID:\n),\nJulie M. Petersen [aut] (ORCID:\n),\nLudovic Trinquart [aut] (ORCID:\n)", "Maintainer": "Malcolm Barrett ", "MD5sum": "77034d83c4068b85e30e8766a3193faa", "_user": "malcolmbarrett", "_type": "src", "_file": "metaconfoundr_0.1.2.9000.tar.gz", "_fileid": "8257a3ac93b97d27537e73219e46bf61d5cd1476c5e0cb322821fca6e0d38ecc", "_filesize": 2768311, "_sha256": "8257a3ac93b97d27537e73219e46bf61d5cd1476c5e0cb322821fca6e0d38ecc", "_created": "2026-05-28T10:12:57.000Z", "_published": "2026-05-28T10:21:01.474Z", "_distro": "noble", "_jobs": [ { "job": 78269547620, "time": 169, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7263317026" }, { "job": 78269547485, "time": 176, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7263318753" }, { "job": 78269547565, "time": 438, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7263387935" }, { "job": 78269547523, "time": 137, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7263299928" }, { "job": 78268952903, "time": 227, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7263263712" }, { "job": 78269547588, "time": 131, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7263304614" }, { "job": 78269547564, "time": 113, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7263298474" }, { "job": 78269547343, "time": 201, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7263327928" }, { "job": 78269547505, "time": 105, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7263296367" } ], "_buildurl": "https://github.com/r-universe/malcolmbarrett/actions/runs/26568397788", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/malcolmbarrett/metaconfoundr", "_commit": { "id": "3af7bc98a79d090d68c79551bcc86cf5b61d2489", "author": "Malcolm Barrett ", "committer": "Malcolm Barrett ", "message": "Increment version number to 0.1.2.9000\n", "time": 1673981696 }, "_maintainer": { "name": "Malcolm Barrett", "email": "malcolmbarrett@gmail.com", "login": "malcolmbarrett", "mastodon": "@malcolmbarrett@mstdn.jp", "bluesky": "@malcolmbarrett.malco.io", "orcid": "0000-0003-0299-5825", "description": "Open-source data science. Ph.D. in Epidemiology", "uuid": 23123711 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "dplyr", "version": ">= 1.0.0", "role": "Imports" }, { "package": "forcats", "role": "Imports" }, { "package": "ggplot2", "version": ">= 3.4.0", "role": "Imports" }, { "package": "magrittr", "role": "Imports" }, { "package": "purrr", "role": "Imports" }, { "package": "rlang", "version": ">= 0.1.2", "role": "Imports" }, { "package": "shiny", "role": "Imports" }, { "package": "stringr", "role": "Imports" }, { "package": "tibble", "role": "Imports" }, { "package": "tidyr", "version": ">= 1.0.0", "role": "Imports" }, { "package": "tidyselect", "role": "Imports" }, { "package": "covr", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "metafor", "role": "Suggests" }, { "package": "patchwork", "role": "Suggests" }, { "package": "readr", "role": "Suggests" }, { "package": "rio", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "roxygen2", "role": "Suggests" }, { "package": "spelling", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "vdiffr", "role": "Suggests" } ], "_owner": "malcolmbarrett", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 11, "_contributors": [ { "user": "malcolmbarrett", "count": 112, "uuid": 23123711 }, { "user": "davisvaughan", "count": 1, "uuid": 19150088 }, { "user": "juliemopetersen", "count": 1, "uuid": 51957341 } ], "_userbio": { "uuid": 23123711, "type": "user", "name": "Malcolm Barrett", "description": "Open-source data science. Ph.D. in Epidemiology" }, "_downloads": { "count": 275, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/metaconfoundr" }, "_devurl": "https://github.com/malcolmbarrett/metaconfoundr", "_searchresults": 9, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/metaconfoundr.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/malcolmbarrett/metaconfoundr", "_realowner": "malcolmbarrett", "_cranurl": true, "_releases": [ { "version": "0.1.0", "date": "2021-10-12" }, { "version": "0.1.1", "date": "2022-08-06" }, { "version": "0.1.2", "date": "2023-01-17" } ], "_exports": [ "%>%", "contains", "count_non_confounders", "ends_with", "everything", "facet_constructs", "geom_cochrane", "label_robins", "last_col", "launch_metaconfoundr_app", "matches", "mc_detect_layout", "mc_heatmap", "mc_longer", "mc_study_values", "mc_trafficlight", "mc_wider", "metaconfoundr", "num_range", "one_of", "plot_non_confounders", "scale_color_cochrane", "scale_fill_cochrane", "scale_shape_cochrane", "score_control", "starts_with", "summarize_control_quality", "theme_mc" ], "_datasets": [ { "name": "ipi", "title": "IPI data", "object": "ipi", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "construct", "factor", "confounder_y_n", "study", "control_quality" ], "rows": 407, "table": true, "tojson": true }, { "name": "ipi_metaanalysis", "title": "IPI data", "object": "ipi_metaanalysis", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "study", "lead_author", "year", "design", "effect_measure", "estimate", "lower_ci", "upper_ci", "sample_size" ], "rows": 11, "table": true, "tojson": true }, { "name": "ipi_wide", "title": "IPI data", "object": "ipi_wide", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "construct", "factor", "confounder_y_n", "Zhu_2001a", "Zhu_2001b", "Zhu_1999", "Smith_2003", "Shachar_2016", "Salihu_2012a", "Salihu_2012b", "Hanley_2017", "deWeger_2011", "Coo_2017", "Ball_2014" ], "rows": 37, "table": true, "tojson": true } ], "_help": [ { "page": "count_non_confounders", "title": "Count and plot non-confounders", "topics": [ "count_non_confounders", "plot_non_confounders" ] }, { "page": "facet_constructs", "title": "Facet by constructs", "concept": [ "plots" ], "topics": [ "facet_constructs" ] }, { "page": "geom_cochrane", "title": "Add Cochrane-style symbols to heatmaps and traffic light plots", "concept": [ "plots" ], "topics": [ "geom_cochrane" ] }, { "page": "ipi_data", "title": "IPI data", "topics": [ "ipi", "ipi_data", "ipi_metaanalysis", "ipi_wide" ] }, { "page": "label_robins", "title": "Label values using ROBINS approach", "topics": [ "label_robins" ] }, { "page": "launch_metaconfoundr_app", "title": "Launch metaconfoundr Shiny app", "topics": [ "launch_metaconfoundr_app" ] }, { "page": "mc_detect_layout", "title": "Tidy metaconfoundr data layouts", "topics": [ "mc_detect_layout", "mc_longer", "mc_study_values", "mc_wider" ] }, { "page": "mc_heatmap", "title": "Plot a heatmap or traffic light plot of 'metaconfoundr()' summaries", "concept": [ "plots" ], "topics": [ "mc_heatmap", "mc_trafficlight" ] }, { "page": "metaconfoundr-open-paren-close-paren", "title": "Prepare a meta-analysis data set for metaconfoundr", "topics": [ "metaconfoundr", "metaconfoundr()" ] }, { "page": "scale_fill_cochrane", "title": "Add Cochrane-style palettes to ggplots", "concept": [ "plots" ], "topics": [ "scale_color_cochrane", "scale_fill_cochrane", "scale_shape_cochrane" ] }, { "page": "score_control", "title": "Add a score of confounding control", "topics": [ "score_control" ] }, { "page": "summarize_control_quality", "title": "Summarize the control quality of studies", "topics": [ "summarize_control_quality" ] }, { "page": "theme_mc", "title": "A minimal theme for metaconfoundr plots", "concept": [ "plots" ], "topics": [ "theme_mc" ] } ], "_readme": "https://github.com/malcolmbarrett/metaconfoundr/raw/HEAD/README.md", "_rundeps": [ "base64enc", "bslib", "cachem", "cli", "commonmark", "cpp11", "digest", "dplyr", "farver", "fastmap", "fontawesome", "forcats", "fs", "generics", "ggplot2", "glue", "gtable", "htmltools", "httpuv", "isoband", "jquerylib", "jsonlite", "labeling", "later", "lifecycle", "magrittr", "memoise", "mime", "otel", "pillar", "pkgconfig", "promises", "purrr", "R6", "rappdirs", "RColorBrewer", "Rcpp", "rlang", "S7", "sass", "scales", "shiny", "sourcetools", "stringi", "stringr", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "viridisLite", "withr", "xtable" ], "_vignettes": [ { "source": "intro-to-metaconfoundr.Rmd", "filename": "intro-to-metaconfoundr.html", "title": "An Introduction to metaconfoundr", "engine": "knitr::rmarkdown", "headings": [ "Creating plots", "Customizing plots", "Summarizing confounder control", "Combining with forest plots", "Using control quality as an analytic category", "Visualizing non-confounders" ], "created": "2020-06-25 01:15:23", "modified": "2021-10-03 19:42:14", "commits": 7 } ], "_score": 5.041392685158225, "_indexed": true, "_nocasepkg": "metaconfoundr", "_universes": [ "malcolmbarrett" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.2.9000", "date": "2026-05-28T10:15:34.000Z", "distro": "noble", "commit": "3af7bc98a79d090d68c79551bcc86cf5b61d2489", "fileid": "b1941e2f2dae37965a66bcaac2fb4d9077ba3ad75ac3b6dfe17793b64d711037", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/malcolmbarrett/actions/runs/26568397788" }, { "r": "4.6.0", "os": "linux", "version": "0.1.2.9000", "date": "2026-05-28T10:15:40.000Z", "distro": "noble", "commit": "3af7bc98a79d090d68c79551bcc86cf5b61d2489", "fileid": "62aef3d434d70b56970a3a57ebb8d53766dfe9288622b122a69d2688db010afd", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/malcolmbarrett/actions/runs/26568397788" }, { "r": "4.5.3", "os": "mac", "version": "0.1.2.9000", "date": "2026-05-28T10:19:20.000Z", "commit": "3af7bc98a79d090d68c79551bcc86cf5b61d2489", "fileid": "caf2967a3f9a363b1d8c3a73bb38221ac13a7c2bbe684c1c5be3e4d12f0d3105", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/malcolmbarrett/actions/runs/26568397788" }, { "r": "4.6.0", "os": "mac", "version": "0.1.2.9000", "date": "2026-05-28T10:14:56.000Z", "commit": "3af7bc98a79d090d68c79551bcc86cf5b61d2489", "fileid": "50a4bf3d27b70554dd99c62ac8bd6bf8c0d1310bf22595b144648b19d41fc547", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/malcolmbarrett/actions/runs/26568397788" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.2.9000", "date": "2026-05-28T10:15:31.000Z", "commit": "3af7bc98a79d090d68c79551bcc86cf5b61d2489", "fileid": "e7b761bb613978673ef18943eb1b28401537d67ee43b8515a3df6e78304e771a", "status": "success", "buildurl": "https://github.com/r-universe/malcolmbarrett/actions/runs/26568397788" }, { "r": "4.7.0", "os": "win", "version": "0.1.2.9000", "date": "2026-05-28T10:14:31.000Z", "commit": "3af7bc98a79d090d68c79551bcc86cf5b61d2489", "fileid": "4b1e1c1f56583241f41c3c82ca5919439895d329d601217200fbba24ba6cac66", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/malcolmbarrett/actions/runs/26568397788" }, { "r": "4.5.3", "os": "win", "version": "0.1.2.9000", "date": "2026-05-28T10:16:08.000Z", "commit": "3af7bc98a79d090d68c79551bcc86cf5b61d2489", "fileid": "d93093c58236a029e9238d2e08089ea28670d9082c9c2d026ace245d564aecd7", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/malcolmbarrett/actions/runs/26568397788" }, { "r": "4.6.0", "os": "win", "version": "0.1.2.9000", "date": "2026-05-28T10:14:19.000Z", "commit": "3af7bc98a79d090d68c79551bcc86cf5b61d2489", "fileid": "e452a10943190eb8bf11c77fcd8a2ec0340914d53c1ffc67d079ea762e4aa087", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/malcolmbarrett/actions/runs/26568397788" } ] }